PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000174G0590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 343aa    MW: 38499 Da    PI: 5.1633
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000174G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.2e-35401312102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++ ++sw +++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  PH01000174G0590  40 FLTKTYDMVDDPTTDAVVSWGATNNSFVVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLK 124
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  PH01000174G0590 125 NIKRRKP 131
                      ****985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-3936129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6136129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-3636129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.0E-204063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNHRMMMDPV KVESRPSMSG AANGPPRPMD GLTDAGPPPF LTKTYDMVDD PTTDAVVSWG  60
ATNNSFVVWD PHIFGTVLLP RYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQR  120
HLLKNIKRRK PPHATPNQQS PGSYLEVGHF GYDGEVDQLK RDKQLLMAEV VKLRQEQQNT  180
RSDLQAMEEK LQGTEQKQQQ MMAFLARVMQ NPEFIRQLIS QSEMRKELED AISKKRRRRI  240
DQGPEAVDTM GSSSSLEQGS QVLFEPQEPA DSLLNSSPSD LESSSVETKG FEVQQGVASS  300
SSQRAKGKTN GELNDDFWED LLHEGGLGDE AGNPVVQDDI LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-273512912120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKNIKRR
2233238KKRRRR
3234239KRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981438.20.0PREDICTED: heat stress transcription factor A-2e-like
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLK4AC790.0K4AC79_SETIT; Uncharacterized protein
STRINGSi036486m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-107heat shock transcription factor A6B